"Unlike NCBI [National Center for Biotechnology Information] BLAST, Paracel BLAST is designed as a parallel application. Both can be run on clusters, but we can run a single job in parallel while NCBI ...

In addition to ChIP-seq data, MACS can be applied to other data types such as DNase-seq 33, MeDIP-seq 34 and MBD-seq 35; however, we suggest using more specialized tools for these alternate purposes.

T-Coffee (Tree-based consistency objective function for alignment evaluation) is a versatile multiple sequence alignment (MSA) method suitable for aligning most types of biological sequences.